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Refactor reference_atmospheric_profile_selector

Mykhailo.Dalchenko requested to merge calibpipe-0.1.0-rc into main

Description

Big refactoring, removing all the functionality except the ones selected for release 0.1 (molecular atmosphere). The core calibrator class is removed and actual calibrations moved into tools.

Closes #164 (closed), #166 (closed), #167 (closed), #157 (closed), #128 (closed)

Commits

  • add pytest.mark.db for some of new tests

  • Add missing test file

  • Comment out obsolete tests

  • removing unneccessary downloads from ci

  • remove muon file from ci

  • Large test refactoring

  • Remove remaining obsolete tools, refactor model selector and model producer

  • Remove unnecessary tools, refactor remaining

  • Remove lst_adapter and refactor imports

  • Remove lst_adapter from the pyproject
  • Use relative imports instead of absolute in order to avoid circular import problems
  • Update atmospheric tools (partially migrate the atmo calibrator)

  • Remove functionality that won't enter calibpipe-0.1

  • Incorporate mdps API update

  • Add alias for macobac12-table-path

  • Refactor molecular atmospheric model producer

  • Decorate tool.run() and minor doc updates

  • Remove obsolete test, fix error testing (just ensure a correct exception has been raised)

  • Fix typos, don't decorate calibrator (tools running it are decorated now)

  • Remove deprecated error handling and decorate run method

  • Use calibpipe_handle_exception decorator in MuonCalibrator

  • Fix MuonCalibrator

  • Refactor throughput calibrators

  • Refactor

  • Refactoring

  • Refactor macobac calculator tool

  • fix typo

  • Don't track generated _version.py

  • Ignore generated API doc

  • Fix tests

  • Fix tests

  • Refactor reference atmospheric profile selector

  • Retrieve Observatory cfg from the DB
  • Refactor tool to use multiple config files
    • avoid cfg data duplication

  • Add ruff config

  • Fix config typo

  • Refactor reference_atmospheric_profile_selector

  • Separate DB configuration
  • Update cwl workflow and config to use an array of cfg files

  • Fix conditional query

  • Revert the scipy restriction and update db quert

  • Fix typo

  • add quotes to avoid NameError in the eval

  • Fix compound condition in the DB query

  • fix typo in CI

  • Dirty refactoring of ref atmo model selector

  • Fixing shell error

  • Refactor atmopsheric db uploading

  • cta --> ctao

  • cta --> ctao

  • renaming reference models

  • Update test to reflect updates in cfg files

  • fix molecular atmosphere calibrator test

  • Fix atmo model example configs

  • Change CTA-N(S) to CTAO-N(S)

  • Allow db port to be None

  • Fix CI for coverage

  • Refactor the tool to upload observatory data

  • Fix initi_db finish step

  • Update DB initializatoin routine

  • Refactor DB initialization (empty tables)

Related Issue

How Has This Been Tested?

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.
Edited by Mykhailo.Dalchenko

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