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CWL implementation of the atmospheric production

Mykhailo.Dalchenko requested to merge feature/cwl-ci into main

Description

This MR introduces workflow steps description in CWL for the following UCs:

  • UC-DPPS-CP-110 (partially complete atmospheric production workflow, a combination of the steps below)
  • UC-DPPS-CP-111
  • UC-DPPS-CP-114
  • UC-DPPS-CP-115

The workflow definition files together with minimal example configuration files are added.

CI configuration has been updated to become closer to the provided template (see #61 (closed)) and also includes now the integration tests running locally the CWL workflows.

Also, few bugs discovered during the development and testing are addressed.

Related Issue

Closes #58 (closed), #61 (closed), and #30 (closed). Partially addresses #50 (closed)

How Has This Been Tested?

Tested manually and in CI

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My code follows the code style of this project.
  • My change requires a change to the documentation.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

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